Protein Info for BPHYT_RS25220 in Burkholderia phytofirmans PsJN

Annotation: ferredoxin oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 415 PF00970: FAD_binding_6" amino acids 50 to 139 (90 residues), 56.1 bits, see alignment E=5.9e-19 PF00175: NAD_binding_1" amino acids 151 to 257 (107 residues), 43.6 bits, see alignment E=6.4e-15 PF00111: Fer2" amino acids 338 to 407 (70 residues), 57.3 bits, see alignment E=1.8e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_5071)

Predicted SEED Role

"Flavodoxin reductases (ferredoxin-NADPH reductases) family 1" in subsystem Anaerobic respiratory reductases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TCL1 at UniProt or InterPro

Protein Sequence (415 amino acids)

>BPHYT_RS25220 ferredoxin oxidoreductase (Burkholderia phytofirmans PsJN)
MMRDQATFQLSPEPAPDHAASRVTQPRFWETLPPRWNSDTDDTLVCCQVRQETHDVKSFF
FRAPSGRAFVFEPGQFITLELEIDGESINRCYTISSPPTRPHTISITVKRVPGGKVSNWL
HDNLHAGAEVRVLGPSGEFTCARHPARKFLFLSAGSGITPLMSMSRAHHELGEDSDIVFV
HSARTPDDIIFARELDLIASNQAHFRTAFVCERVGARTNWPGVTGFLTLPLLKLIAPDYL
EREIFTCGPAPYMQAVRNLLDEGGFDRRHYHEESFSFETVSEVAAQLTTAHVADALQSVG
APVTADSFVEAREEAPGFAPAPVSIETEIRFKVSFAKSNREIECGSGQHVLDAAKKAGVR
LPASCTQGMCGTCKVKLVSGEVAMKHAGGIRQREIDQGMVLLCCSKPLSDLVVDK