Protein Info for BPHYT_RS24775 in Burkholderia phytofirmans PsJN

Annotation: helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1155 PF04434: SWIM" amino acids 67 to 87 (21 residues), 19 bits, see alignment (E = 2e-07) PF04851: ResIII" amino acids 663 to 819 (157 residues), 37.7 bits, see alignment E=5.2e-13 PF00176: SNF2-rel_dom" amino acids 668 to 948 (281 residues), 233 bits, see alignment E=1e-72 PF00270: DEAD" amino acids 688 to 819 (132 residues), 27.9 bits, see alignment E=4.6e-10 PF00271: Helicase_C" amino acids 983 to 1091 (109 residues), 76.3 bits, see alignment E=5.6e-25

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_4987)

Predicted SEED Role

"helicase, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TCC7 at UniProt or InterPro

Protein Sequence (1155 amino acids)

>BPHYT_RS24775 helicase (Burkholderia phytofirmans PsJN)
MSSVFFDRERIAEWLGDHTVAKARSVGPVANVKWHGATLSGDVQGTQPTPYRTRVRFRTD
GGSPWAQGDCTCPVGRNCKHVAALLFAELEYHDEMDHITQIELDDSETTGDLPPKRIAHM
AHMGQPSGVRPELVSWLERFRARAEAADADAQKASAPRTQTLAYQLNWSSFHKRHEVVLY
RARCNAAGAVVAVDEAWGNVEAALLKQPKFVSDEDLSILRGLWLGRSREDFGQFILRGTS
GAEMLQKLIATGRLFFDFKPAPGEAGPAALSRGADRPGRIEWEPLADERLRPVLCTEPRA
SMVLPTEPVWYVDGVANEAGIVQSSLPFQQLPDYLAMPPISLAEAPLVASVLREVAPELP
LPPTQDASAIRVIDVEPVPVLSLNSHALPSSTSKAGLRQSGAVELAGVSFDYDGVSINVD
SSVTLVPMPGGDVIHIRRRYEAEKKRLLELRKTGLQKVPTSRVYASRLLPDTMLGLPDAE
AWSAFVNDAVPELVSKGWRVTMAPEFRYNVIEIDAIEGTAHQAGDGWFDLEMGIRIGERN
VRLEPLLADLFRRDRRWLGGALEAIADDEPIELKTEENKRLRLRAGRLKPVVRVLVDLFD
ALGGSLADGAPLRVASVDAGRLEALNGTGRWQFRGDDSIRQLAQRLQAGPGLREVPVPRG
LKAELRTYQHQGLNWMQFLREQNLAGVLADDMGLGKTVQTLAHILAEKEAGRLTRPALIV
VPTTLVHNWREEARRFAPELKVLLLNGPQRKERFEQIGEHELILTTYALLWRDQKVLAEH
EYHLLILDEAQYVKNATTKAAQAIRGLRARHRLCLTGTPLENHLGELWSQFDFLLPGFLG
SQKDFTRRWRNPIEKNGDGVRRALLARRIRPFMLRRRKDEVAKELPAKTTILCSVDLEGA
QRDLYETVRTAMQEKVRAAVSAQGLARSHIIVLDALLKLRQVCCDPRLVKTLKAAAEAND
VPEKSDRTGKIEKGARAMRSAKLDLLLSMLPELIEEGRRVLLFSQFTGMLSLIAQALEEV
GIPYMMLTGDTTDRVTPVERFQKGEVPLFLISLKAGGVGLNLTAADTVIHYDPWWNPAAE
NQATDRAHRLGQDKPVFVYKLIAAGSIEEKIVELQEQKAGLADSILSEDAAGAAKFSDDD
LDALFAPMPEIESGR