Protein Info for BPHYT_RS24770 in Burkholderia phytofirmans PsJN

Annotation: DeoR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 260 PF08220: HTH_DeoR" amino acids 6 to 59 (54 residues), 55 bits, see alignment E=1.1e-18 PF08279: HTH_11" amino acids 6 to 51 (46 residues), 29.4 bits, see alignment 1.2e-10 PF13412: HTH_24" amino acids 8 to 49 (42 residues), 24 bits, see alignment 4.8e-09 PF00455: DeoRC" amino acids 75 to 231 (157 residues), 147.5 bits, see alignment E=6.9e-47

Best Hits

KEGG orthology group: K02444, DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor (inferred from 100% identity to bpy:Bphyt_4986)

Predicted SEED Role

"Transcriptional regulator, DeoR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TCC6 at UniProt or InterPro

Protein Sequence (260 amino acids)

>BPHYT_RS24770 DeoR family transcriptional regulator (Burkholderia phytofirmans PsJN)
MFSNQRQAEILRIVREQRTCTITDLAGRFDVSDETIRRNIKPLIADGLLIKVHGGIMLPE
RLDEPPFQRRMTASQQGKRAIGARIGELVRDGDSLILEGGTTCLHIAQALAARSRLTVVT
PSIEVARLLAPRNGNRVFITGGELRPDDCAAVGDSALAFLRQFHVRYAIVSVTAIDMQGR
FMDALPADAAFSQAACAQAERCVVAADHAKFGHSALVHAFGADAVDLLVTDDALAPALAQ
VFAAAGVDVEVSTQPISSNA