Protein Info for BPHYT_RS24740 in Burkholderia phytofirmans PsJN

Annotation: RNA polymerase subunit sigma-24

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 172 TIGR02937: RNA polymerase sigma factor, sigma-70 family" amino acids 4 to 157 (154 residues), 82 bits, see alignment E=1.9e-27 PF04542: Sigma70_r2" amino acids 9 to 72 (64 residues), 51.9 bits, see alignment E=8e-18 PF08281: Sigma70_r4_2" amino acids 103 to 155 (53 residues), 57.3 bits, see alignment E=1.5e-19 PF04545: Sigma70_r4" amino acids 108 to 157 (50 residues), 41.2 bits, see alignment E=1.4e-14

Best Hits

KEGG orthology group: K03088, RNA polymerase sigma-70 factor, ECF subfamily (inferred from 99% identity to bxe:Bxe_B1671)

Predicted SEED Role

"RNA polymerase sigma-54 factor RpoN" in subsystem Flagellar motility or Flagellum or Transcription initiation, bacterial sigma factors

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TCC0 at UniProt or InterPro

Protein Sequence (172 amino acids)

>BPHYT_RS24740 RNA polymerase subunit sigma-24 (Burkholderia phytofirmans PsJN)
MDVRDELMEHVPRLRRYARALINNRDLADDLVQDTLERALGRTGMFQPGTDLRAWLFTIM
HNVFANQARKASARAVHVAVDDESVSESEFAVPSEQTRSLEMRDLDYALQRLPMEQREVV
LLVGLEEMSYADVALALNIPLGTVMSRLSRGRERLRALMAGTQPGAKLQVVR