Protein Info for BPHYT_RS24615 in Burkholderia phytofirmans PsJN

Annotation: peptidase M23

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 325 signal peptide" amino acids 1 to 41 (41 residues), see Phobius details PF01476: LysM" amino acids 81 to 123 (43 residues), 49.6 bits, see alignment 3e-17 PF01551: Peptidase_M23" amino acids 223 to 316 (94 residues), 90 bits, see alignment E=9.3e-30

Best Hits

KEGG orthology group: K06194, lipoprotein NlpD (inferred from 100% identity to bpy:Bphyt_4956)

Predicted SEED Role

"Membrane proteins related to metalloendopeptidases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TC96 at UniProt or InterPro

Protein Sequence (325 amino acids)

>BPHYT_RS24615 peptidase M23 (Burkholderia phytofirmans PsJN)
MGKRFDKTMMASLAGVWVALAVGGCANVGQQGAQTGAAAGAAPASSVPAASATASDATSA
APPGISAEQSALLKKAPPLVYRVKRGDSLARIAQHHHCSVKQLQAWNGLNASSRLKLGQV
LHVASPETVRAVNAANAAAKAVAASTPAASVAARQAGATASGATQPPSQSAQAAQSAQSA
QSPALSAAEAREVAQQTARHANGVALAWPAGGRVVEGFQPGETRGIEIGGKPGDPVRAAA
DGKVMYAGTGLNSYGSLIIVQHNKDFLTAYSHNRKLLVKTGDIVAQGQQIAEMGDENNSR
VSVGFELRRDGKPIDPMPYLPQGRG