Protein Info for BPHYT_RS24600 in Burkholderia phytofirmans PsJN

Annotation: (2Fe-2S)-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 245 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF00111: Fer2" amino acids 82 to 124 (43 residues), 24.1 bits, see alignment 2.9e-09 PF01799: Fer2_2" amino acids 146 to 231 (86 residues), 80 bits, see alignment E=1.2e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_4953)

Predicted SEED Role

"Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TC93 at UniProt or InterPro

Protein Sequence (245 amino acids)

>BPHYT_RS24600 (2Fe-2S)-binding protein (Burkholderia phytofirmans PsJN)
MSAAAASGTSAALGTAPASSASVASASGSLAAPASDVAGASAAGAASAPAGASAAAVVER
PLTHFRSMPLSIKVNGEIVGPTDVPAGLMMIDYLHEYLHLTGSRLGCGQGICHACVVIVD
KPDGTSEEVRTCITGANFFHGKSIRTIEGHAKRNEAGEVVELAPIQQKFLEHFSFQCGYC
TPGFVNAAIVLIERLKRQPVAKDKVEATITEALNDHICRCTGYVRYYEAVKEVVLTTPGL
VKDAA