Protein Info for BPHYT_RS24440 in Burkholderia phytofirmans PsJN

Annotation: type VI secretion protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 330 transmembrane" amino acids 228 to 239 (12 residues), see Phobius details TIGR03373: type VI secretion-associated protein, BMA_A0400 family" amino acids 10 to 142 (133 residues), 123.3 bits, see alignment E=3.9e-40 PF09867: TagF_N" amino acids 10 to 139 (130 residues), 99.7 bits, see alignment E=6.8e-33

Best Hits

KEGG orthology group: K11890, type VI secretion system protein ImpM (inferred from 100% identity to bpy:Bphyt_4922)

Predicted SEED Role

"FIG00977343: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TC66 at UniProt or InterPro

Protein Sequence (330 amino acids)

>BPHYT_RS24440 type VI secretion protein (Burkholderia phytofirmans PsJN)
MTQTVQAQIAYFGKIPSRGDFVKSAHNPQLLATLDRWIAEAMELLSDDPRWKIVYENAKP
MHFAFLGSRSKLAIAGHMVASHDQSSRRFPFLAATALEVEKPLTFLAHSPLAFARLWSRV
AAQMKPLLGASEPPGALQALGETQVPIEIGGGPGNPHDGTFNDFVEHQTLAGLEQMLLAS
GHPVRLRGAMLALGSLLRPVMQSGSSHLERGLTLPLPNDPFYRSLVAAFWLELIAPFVAQ
ADFELAIFIGTIAERERLIIGFNGASAKTLHSVVDPQSYAAHNIDIDDPEWIDEHAQNDH
GISKLVSYLDQPQLSLRVSIDTFREAFTGA