Protein Info for BPHYT_RS24420 in Burkholderia phytofirmans PsJN

Annotation: type VI secretion protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 364 TIGR03347: type VI secretion protein, VC_A0111 family" amino acids 19 to 345 (327 residues), 333.5 bits, see alignment E=5.4e-104 PF06996: T6SS_TssG" amino acids 19 to 344 (326 residues), 316.8 bits, see alignment E=7.9e-99

Best Hits

KEGG orthology group: K11895, type VI secretion system protein ImpH (inferred from 100% identity to bpy:Bphyt_4918)

Predicted SEED Role

"Uncharacterized protein ImpH/VasB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TC62 at UniProt or InterPro

Protein Sequence (364 amino acids)

>BPHYT_RS24420 type VI secretion protein (Burkholderia phytofirmans PsJN)
MQTAQRRIDPGVVEQLLDEPHRFEFFQAVRILEKWFAQQSPSQPGRPGEIVAQRIAFRNS
LSMSFPPSEIHGAQSYDDAGAALKEKSQRTAALEDGSLDKVDITPAFFGLLGGQGALPLH
YTEQIIAREQIKRDRAAREFFDVFSNRATALFYAAWKKYRLPFHYELDRDERYLPLLLAL
AGVADDDTRNSLQSGEGALFDEAIAGYALAARHRPVSAAYLQRTLSEYFKVRVRVEQFVG
KWYDVPRDQLTLLGSVNATLGATALAGERVWQRDMRARLVIGPLDKADYEAFLPGADRAV
ALERMLTLLAGVTLEYEVSLVLRREAVGPSLLSKGARLGWDAFLCTKDADRDRADARYEL
HVIH