Protein Info for BPHYT_RS24405 in Burkholderia phytofirmans PsJN

Annotation: type VI secretion system effector

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 167 PF05638: T6SS_HCP" amino acids 5 to 139 (135 residues), 138 bits, see alignment E=1.2e-44 TIGR03344: type VI secretion system effector, Hcp1 family" amino acids 15 to 147 (133 residues), 80.6 bits, see alignment E=6.3e-27

Best Hits

KEGG orthology group: K11903, type VI secretion system secreted protein Hcp (inferred from 100% identity to bpy:Bphyt_4915)

Predicted SEED Role

"Uncharacterized protein ImpD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TC59 at UniProt or InterPro

Protein Sequence (167 amino acids)

>BPHYT_RS24405 type VI secretion system effector (Burkholderia phytofirmans PsJN)
MKDIYLKFGNPAIKGESADKDHAGWIEIDSWSHAITQPRSATASTAGGHTSERCEHADMQ
FTKDIDVVSPLIYQHASGGTTFDEVTIDFMRSDGEGNRIKYLEVKLKYVIISSVTPSVVG
EGLPTEQFSLKYAAVQWKYTQQKIGGNQGGNAQGAWSLTKNDKTYAV