Protein Info for BPHYT_RS24280 in Burkholderia phytofirmans PsJN

Annotation: DSBA oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 513 transmembrane" amino acids 33 to 56 (24 residues), see Phobius details amino acids 68 to 87 (20 residues), see Phobius details amino acids 99 to 118 (20 residues), see Phobius details amino acids 124 to 148 (25 residues), see Phobius details amino acids 159 to 180 (22 residues), see Phobius details amino acids 187 to 207 (21 residues), see Phobius details amino acids 219 to 238 (20 residues), see Phobius details amino acids 249 to 266 (18 residues), see Phobius details amino acids 287 to 311 (25 residues), see Phobius details amino acids 324 to 345 (22 residues), see Phobius details amino acids 353 to 374 (22 residues), see Phobius details amino acids 380 to 403 (24 residues), see Phobius details amino acids 421 to 442 (22 residues), see Phobius details amino acids 482 to 505 (24 residues), see Phobius details TIGR00711: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family" amino acids 34 to 445 (412 residues), 260.7 bits, see alignment E=1.3e-81 PF07690: MFS_1" amino acids 38 to 430 (393 residues), 186.4 bits, see alignment E=1.1e-58 PF06609: TRI12" amino acids 52 to 446 (395 residues), 39.8 bits, see alignment E=3.2e-14 PF00083: Sugar_tr" amino acids 69 to 202 (134 residues), 40.6 bits, see alignment E=2.5e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_4890)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TC34 at UniProt or InterPro

Protein Sequence (513 amino acids)

>BPHYT_RS24280 DSBA oxidoreductase (Burkholderia phytofirmans PsJN)
MDQSTTTRPAELTQPHAQTTAPAHAADHPPIRLLFPALLLVMLLAALDQTIVSTALPTIV
GELGGLNNLSWVVTAYLLSSTIVVPLYGKFGDLFGRKIVLQTAIIVFLVGSALCGVAQDM
TQLIVLRALQGLGGGGLLVVTMAAIADVIPPAERGRYQGVFGGVFGLATVIGPLLGGFLV
EHLSWRWIFYINLPLGIISLVVIGTVFKPHVRQVKHTIDYMGAAFLAGALTCIILFTSQG
GTILPWSSPQLWFTLGMGLVSIWGFIHEERSAVEPIMPLELFKQRTFLLSSLIGFIIGVS
LFGSVTFLPLYLQVVKGSTPSEAGMQMLPMMGGLFLMSMVTGRVISKIGKYRMFPIAGTF
LVAVAMLLLARLQIGTPIHVMYIDMGILGCGLGMVMQVLILAVQNTVEFKHMGVATSGAT
LFRSIGGSIGVASFGAVFSNGLAARLEKLIPPDTELPHALGPAAIHALPQALRDDYLQAF
AGALHTVYLSAACVVVLAFALAWLLKDHPLRKH