Protein Info for BPHYT_RS24175 in Burkholderia phytofirmans PsJN

Annotation: C4-dicarboxylate ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 330 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF03480: DctP" amino acids 34 to 315 (282 residues), 291.5 bits, see alignment E=3.6e-91 TIGR00787: TRAP transporter solute receptor, DctP family" amino acids 38 to 282 (245 residues), 220.8 bits, see alignment E=1.1e-69

Best Hits

Swiss-Prot: 80% identical to DCTP_BURCM: Solute-binding protein Bamb_6123 (Bamb_6123) from Burkholderia ambifaria (strain ATCC BAA-244 / AMMD)

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_4868)

Predicted SEED Role

"TRAP-type C4-dicarboxylate transport system, periplasmic component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TC13 at UniProt or InterPro

Protein Sequence (330 amino acids)

>BPHYT_RS24175 C4-dicarboxylate ABC transporter (Burkholderia phytofirmans PsJN)
MNKKFAPSRVSLIVAASVLALSTVSAQARVFRVSDVHGDTYPTNMAVKHMGEEINKATGG
KDSVKVFGNSALGSENDTIDQVRIGALDMARANGAAFNEIVPESMIPSLPFLFRDIDHFR
KVMYGPEGQKILDAFKAKGMIALTFYESGARSIYTKKPIHTPADMKGLKVRVQPSDLMVD
EIRAMGGTPTPMPFAEVYTGLKTGLVDAAENNLPSYEETKHFEVAPVYSETQHSMTPEVL
VFSKKVWDTLTPQEQEIIKKAAADSVPYYQKLWTAREADASKTVTKGGATIVASTQIDRA
AFVKAMQPVWAKYEKTPQMKQLVDEIQAVK