Protein Info for BPHYT_RS23970 in Burkholderia phytofirmans PsJN

Annotation: iron ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 347 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details PF13531: SBP_bac_11" amino acids 48 to 296 (249 residues), 70.8 bits, see alignment E=3e-23 PF01547: SBP_bac_1" amino acids 49 to 292 (244 residues), 59.7 bits, see alignment E=9.9e-20 PF13416: SBP_bac_8" amino acids 54 to 311 (258 residues), 66.8 bits, see alignment E=5.8e-22 PF13343: SBP_bac_6" amino acids 100 to 310 (211 residues), 76.9 bits, see alignment E=3.6e-25

Best Hits

KEGG orthology group: K02012, iron(III) transport system substrate-binding protein (inferred from 100% identity to bpy:Bphyt_4828)

Predicted SEED Role

"Ferric iron ABC transporter, iron-binding protein" in subsystem Campylobacter Iron Metabolism or Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TBJ0 at UniProt or InterPro

Protein Sequence (347 amino acids)

>BPHYT_RS23970 iron ABC transporter substrate-binding protein (Burkholderia phytofirmans PsJN)
MAYNSFGTRLRAVATSLGSAVALTLAAFATVPSAAEAASITLYNAQHEQVVNLLAKDFEK
QSGISVKIRNGEGPAMAAQIVAEGAATPADVYFTENSPELMLLEEKGLLNKVDASTLATV
PARFNSPTGAWVAVTARENVLAYNTTKVQASQLPQSLFDLAKPEWKGKIGIAPSDGDFLP
LVSAVLALKGEAQTVQWLKGLKANAQIFDDDEGVVAAVNRGGVATGLINNYYWARLHAEL
GDAKTRSAIYHFANGDAGAAVNVSGAAVLKSAHNTDGAQKFLAYLVSERAQELMAKSHVM
FEYPLHAGVAPDPILKPFAELSPPPLTIQQLGDDSQAGKLLRQAGLL