Protein Info for BPHYT_RS23740 in Burkholderia phytofirmans PsJN

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 251 PF08220: HTH_DeoR" amino acids 6 to 60 (55 residues), 59.4 bits, see alignment E=3.5e-20 PF08279: HTH_11" amino acids 6 to 52 (47 residues), 32.7 bits, see alignment 8.3e-12 PF00455: DeoRC" amino acids 73 to 230 (158 residues), 150.8 bits, see alignment E=4.9e-48

Best Hits

Swiss-Prot: 36% identical to GLPR_ECOLI: Glycerol-3-phosphate regulon repressor (glpR) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 98% identity to bxe:Bxe_B1877)

Predicted SEED Role

"Transcriptional regulators of sugar metabolism"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TDW3 at UniProt or InterPro

Protein Sequence (251 amino acids)

>BPHYT_RS23740 AraC family transcriptional regulator (Burkholderia phytofirmans PsJN)
MLAEQRHQYILAQVAKTGALSVAELVRELNVSRETIRRDLNALAGRGLLVTTHGGALSSD
RREPDLDTREAANAGAKRAIGERAAEFVPDGASLIIDSGSTTQAVARALLDRHRLSVYTN
DWRIALLLGRRNDNRITLLGGELSDIEDATFGLDTVHQLTQYHADFAFIGAGGISPDGYL
TDYSRMAAEVRSRMIAAADMVVVVADHSKFGRVTPVRINGIESTRYLVTELAPERALGKA
IAAHGPEILIA