Protein Info for BPHYT_RS23545 in Burkholderia phytofirmans PsJN

Annotation: nodulation protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1106 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 337 to 354 (18 residues), see Phobius details amino acids 361 to 381 (21 residues), see Phobius details amino acids 388 to 411 (24 residues), see Phobius details amino acids 431 to 456 (26 residues), see Phobius details amino acids 464 to 490 (27 residues), see Phobius details amino acids 524 to 548 (25 residues), see Phobius details amino acids 561 to 576 (16 residues), see Phobius details amino acids 922 to 942 (21 residues), see Phobius details amino acids 962 to 987 (26 residues), see Phobius details amino acids 1025 to 1047 (23 residues), see Phobius details amino acids 1055 to 1079 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 3 to 824 (822 residues), 718.1 bits, see alignment E=8.5e-220 amino acids 842 to 1079 (238 residues), 255.7 bits, see alignment E=4.1e-80

Best Hits

KEGG orthology group: K07789, RND superfamily, multidrug transport protein MdtC (inferred from 100% identity to bpy:Bphyt_4746)

Predicted SEED Role

"Cation/multidrug efflux pump"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TDR6 at UniProt or InterPro

Protein Sequence (1106 amino acids)

>BPHYT_RS23545 nodulation protein (Burkholderia phytofirmans PsJN)
MNISALFIRRPVATALLAFAILISGALAYFRLPVAPLPNIAFPVIALQANMAGASPEIMA
ATVAEPLERRLATIADVNQLTSISYVGSSLIIVVFGLNRDINGAARDVQAAIQAARADLP
TTLRSNPTYRQYNPAGAPIMVLSLTSDTLTKAQLYDSADSVIQQQLSQITGVGQITLGGG
ALPSVRVELEPGKLNSYGIGLEDVRAAIGAANANSAKGHVDQGEQRYVVTSNDQISKAAP
YRDVVIAYRDGAPVLLRDVAQVRDSNENIRNAGLYNGKSAVLVIVYPTPGSNVVQTVGQI
RARLPIIEAALPSAIHVNVAIDRSESVNSSVADTERTLFIAVLLVVGVVFVFLLSPRATL
IPAVALPLSIVGAFGPMYLLGYSIDNLSLMALTIGTGFVVDDAVVVLENIVRHLEAGLEP
KEAALRGSAEVGFTVISMSLSLIAVFLPILLMPGIVGLLFHEFAVTLSIAIILSLIISLT
VTPVMCAYLLSHERAMHSKARWARWIEAQFERFKQAYSRSLATALDHALAVVLLLIGLLV
ANVFLARLLSGTFFPEQDTGILIGQIIADQSVSFSAMEKKLAQLQSIVKQDPAVASVAGF
TGGRALNTANVFIELKPLAQRHLSATEVVNRLRPKLNAVSGARLFLQAQQDLQIGGRQAA
AEYQYTLTSDDANALFTWVPKLVTELGKYRSKMEDVNSDLQQNGLQTYVNFSRATATRYG
FQPNQIDNVLYDAFGQRTVSTIYNPLNQYFVVMEVAPAYWQYPQALNQIYLSTAAGNANG
TQQTQMSRATVTAVQQRAAVSSASSTSANTNSLNADAEANQQTNSISNSKGGNSSGSADS
TAAETMVPLAALMTFSNSHTATQVNHQSGLVAGTISFNLPAGGSLSEAGQIIAQAERDIG
MPASVHGAFAGAAQAYAQSMGAVPLLILAALVVVYLVLGVLYENTVHPLTILSTLPSAGI
GATLALLIFGTPFSVIAMIGIILLIGIVKKNGIMMVDVAIQLQRHEGMNARDAIHEAAVV
RLRPIMMTTAAAVLGAVPLAIGIGQGASLRQPLGVTVMGGLLVSQVFTLYTTPVIYLYLD
RLRARLARWSARLPWNRRGEAPDTSA