Protein Info for BPHYT_RS23085 in Burkholderia phytofirmans PsJN

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 470 transmembrane" amino acids 20 to 44 (25 residues), see Phobius details amino acids 61 to 81 (21 residues), see Phobius details amino acids 86 to 105 (20 residues), see Phobius details amino acids 111 to 133 (23 residues), see Phobius details amino acids 144 to 167 (24 residues), see Phobius details amino acids 173 to 191 (19 residues), see Phobius details amino acids 265 to 286 (22 residues), see Phobius details amino acids 300 to 320 (21 residues), see Phobius details amino acids 328 to 346 (19 residues), see Phobius details amino acids 352 to 374 (23 residues), see Phobius details amino acids 394 to 412 (19 residues), see Phobius details amino acids 418 to 438 (21 residues), see Phobius details PF07690: MFS_1" amino acids 26 to 306 (281 residues), 105.4 bits, see alignment E=4.7e-34 amino acids 305 to 444 (140 residues), 51.8 bits, see alignment E=9.2e-18 PF06779: MFS_4" amino acids 37 to 197 (161 residues), 38.1 bits, see alignment E=1.8e-13 PF00083: Sugar_tr" amino acids 52 to 450 (399 residues), 153.1 bits, see alignment E=1.7e-48

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_4651)

Predicted SEED Role

"Niacin transporter NiaP" in subsystem NAD and NADP cofactor biosynthesis global or NAD regulation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TDI1 at UniProt or InterPro

Protein Sequence (470 amino acids)

>BPHYT_RS23085 MFS transporter (Burkholderia phytofirmans PsJN)
MSAVAARLERLPLSGFHRKLLLIGGLGYLFDGLDSSSLAFLLPVVSKLWHLSSAETGLVA
SSTYIGYFFGAFLSGVFADLIGRRRIMMTALAIYCVASLASAAATDWHTFFALRIVAGFG
SGAETVVIAPFLAEFVPRRYRGMFCGALVGFMSFGYLSSSILGFVVVRNYVDGWRYLAVV
TSLPVVMLLWWRRTLPESPRWLESQGRTDEANRIVSTIESWFAGRGIHLPPVGSVGVLPA
SARASGSALQNVLTLWSPRLARTTAVSWLMWFSVAFAYYSFFSWIPSLLLKEGLTMTKSF
GYSIAIYGAQIPGYFSAAWLNERIGRKAVVASYMLLGGIAAIALAFSHTGIGIMIAGICL
SFFMNGAFAGVYAYTPEVFPTAVRTTGTGSSSSFGRIGSVSAPILVGLIYPVLGFLGVFA
MTTTVLLIGACVVFFLGIETRNRSLEDIEAEEFGRTQDVRGPLSSTEIHG