Protein Info for BPHYT_RS23040 in Burkholderia phytofirmans PsJN

Annotation: peptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 756 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details PF20091: Abhydrolase_10" amino acids 362 to 740 (379 residues), 106.6 bits, see alignment E=7.5e-35

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_4642)

Predicted SEED Role

"FIG00460613: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TDH2 at UniProt or InterPro

Protein Sequence (756 amino acids)

>BPHYT_RS23040 peptidase (Burkholderia phytofirmans PsJN)
MKVQSVAVSVGVGVGIALLGGCGHDSVSSSSPAMAKGAGFIQSFQIVSSAPAFGGATPAG
AAGPYQVISAVVHGELDPNDPLNAGIVNLKNAPVGSDGYVAYTTDVVILRPQNASAAKRV
LFYDVVNRGSKIGAASFVGGGALDTGAAPSSSFPSLLRNGYTILWSGWQGDVPLAGNSTT
SGAGLLGASFPVATNKDGTPMTGLSREEFIPDYAGGPPTTIPLTYPPANLSDKSSVTFTA
RQSWLTAYGSIPGGLETYTAPSQPVTTWSYVSTPNNVYEGNYSVTFTPPATVPGPNGTQV
APDAGTIYSFVYQAAAPTVDGIGFAALRDLVSFLRYDTADAQGVANPLNDLKNAGCAATT
CSTSTNFDIAIGEGISQSGRFMKDFLYQGFNVDKHGKIVFDGMFPIISAARRTWTNAAFA
QPGRWSKQHEDHFMPGFQFPFTYATTTDPVSGATDGILKACTATNTCPKIMQLDGAFEWW
GGAASLVVTDGRGNDIQLPSNVRYYLVAGTQHGGGSGVTTGNMTVPAAGSQCQLPGSPVE
ETPVERALIPALVAWVGKGTPPPASQYPTVAAGTLVAPTQATVGFPSLTNVMVPSGAAAT
PTSLQLTFNGEYNQLFVTDYSNAVPVVNTAQAYTILVPKVDANGNETSGVLVPDVAAPLA
TYTGWNYRGAGHAIGDGCISNGAAIPFAVNAAAQAGGTDTRTTLATLYGGSRSKYQAAVA
AAANALVSQGYLLQDDATNVFIANASAVSATLLPQP