Protein Info for BPHYT_RS22835 in Burkholderia phytofirmans PsJN

Annotation: flagellar motor protein MotA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 35 to 54 (20 residues), see Phobius details amino acids 149 to 169 (21 residues), see Phobius details amino acids 181 to 203 (23 residues), see Phobius details PF20560: MotA_N" amino acids 7 to 81 (75 residues), 36.2 bits, see alignment E=5.9e-13 PF01618: MotA_ExbB" amino acids 104 to 215 (112 residues), 89.9 bits, see alignment E=1.1e-29

Best Hits

Swiss-Prot: 30% identical to POMA_VIBAL: Chemotaxis protein PomA (pomA) from Vibrio alginolyticus

KEGG orthology group: K02556, chemotaxis protein MotA (inferred from 100% identity to bpy:Bphyt_4599)

Predicted SEED Role

"Flagellar motor rotation protein MotA" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TD57 at UniProt or InterPro

Protein Sequence (254 amino acids)

>BPHYT_RS22835 flagellar motor protein MotA (Burkholderia phytofirmans PsJN)
MDLLTLFGAVFGVTAIVAGFSLEGGHFTSLFQLEAFVIVLGGTFGAVMIQNTWARFFDGI
KQLRLAFVKARQVDRESLSVLLEWGDQAKLNGMLVFESIEAGGINPFAKRGLELLANGVS
TAVLEDALQRELDAYERNHMLAARIWQQAGGYAPTFGILGAVLGLIQVTGHMLEPAQLGQ
GIAVAFVATLYGLALANLVFLPLYGKIRAQVDSELRFRRLYLDGLLAISRKESPHTIETR
LAGDVRERSAELLG