Protein Info for BPHYT_RS22780 in Burkholderia phytofirmans PsJN

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 283 signal peptide" amino acids 1 to 43 (43 residues), see Phobius details transmembrane" amino acids 78 to 105 (28 residues), see Phobius details amino acids 112 to 132 (21 residues), see Phobius details amino acids 144 to 165 (22 residues), see Phobius details amino acids 189 to 214 (26 residues), see Phobius details amino acids 246 to 267 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 97 to 272 (176 residues), 64.2 bits, see alignment E=7e-22

Best Hits

KEGG orthology group: K02026, multiple sugar transport system permease protein (inferred from 100% identity to bpy:Bphyt_4588)

Predicted SEED Role

"ABC-type sugar transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TD47 at UniProt or InterPro

Protein Sequence (283 amino acids)

>BPHYT_RS22780 sugar ABC transporter permease (Burkholderia phytofirmans PsJN)
MFPIPIDKWKPATRRMYKLTLPVALLIWLLPMIAVLVTSVRSTEELSEGNYWGWPKHFAM
FDNYREALTTSPMLHYFWNSVLITVPAVVGSIALAAMAGFALAIYRFRGNSTLFATFVAG
NFVPVQVLMIPVRDLSLQLGLFNTVSALILFHVSFQTGFCALFLRNFIKQLPFELVEAAR
IEGANEWTVFFKIVLPLIRPALAALAILVFTFVWNDYFWALCLTQGDDAAPITVGVAALK
GQWTTAWNLVSAGSILAALPSVAMFFAMQKHFVAGLTFGATKG