Protein Info for BPHYT_RS22555 in Burkholderia phytofirmans PsJN

Annotation: transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 189 transmembrane" amino acids 64 to 83 (20 residues), see Phobius details PF05280: FlhC" amino acids 1 to 172 (172 residues), 284.2 bits, see alignment E=1.7e-89

Best Hits

Swiss-Prot: 89% identical to FLHC_PARP8: Flagellar transcriptional regulator FlhC (flhC) from Paraburkholderia phymatum (strain DSM 17167 / CIP 108236 / LMG 21445 / STM815)

KEGG orthology group: K02402, flagellar transcriptional activator FlhC (inferred from 98% identity to bge:BC1002_4404)

Predicted SEED Role

"Flagellar transcriptional activator FlhC" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TE01 at UniProt or InterPro

Protein Sequence (189 amino acids)

>BPHYT_RS22555 transcriptional regulator (Burkholderia phytofirmans PsJN)
MLKRSLTEDAQEVFRAIALIELGARMQVLESELTLSRDRMIRLYREVKGVSPPKGMLPFS
ADWYMTWLANIHASLFYNTYLFLKNEARCSHLDALTKGYRLYLEHCQHSETEPVLDLTRA
WTLVRFFDADILQLTKCCRCTGKFVAHKHDLQHNVVCGACQPPSRAGKTKKAAAARQEAL
EAAQIAQAA