Protein Info for BPHYT_RS22325 in Burkholderia phytofirmans PsJN

Annotation: histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 499 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 181 to 203 (23 residues), see Phobius details PF00672: HAMP" amino acids 201 to 254 (54 residues), 29.4 bits, see alignment 1.6e-10 PF00512: HisKA" amino acids 267 to 335 (69 residues), 52 bits, see alignment E=1.2e-17 PF02518: HATPase_c" amino acids 385 to 487 (103 residues), 88.6 bits, see alignment E=8e-29 PF13581: HATPase_c_2" amino acids 390 to 463 (74 residues), 32 bits, see alignment E=2.1e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_4495)

Predicted SEED Role

"sensor histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TDX9 at UniProt or InterPro

Protein Sequence (499 amino acids)

>BPHYT_RS22325 histidine kinase (Burkholderia phytofirmans PsJN)
MVNLTLTQRLSLVFSVLLLACCGASAFLQIRSSDLHEKEVIQSLSRNLADHIAHGNSLMD
ANGLRPDAVRQLFGQLMRVNPSVEVYLLDNQGHIKGDDAPAGHVKREQVNLAPIRQFIAG
DSLPILGDDPRSVDGKKVFSAAPLQLSGQPPSGYIYVVLLGEEHDALAARVAASSVLRTT
LWSMALVALLGLLAGLTAFGLITRPLRRLTDAMRRFDAEGEPDIQPSVPRSSPAGRRDEI
AVLEATFAQMANRIGEQWRALTRQDQQRRELIANISHDLRTPLTSLHGYLETLSLKSDTL
GETERKRYLAIALAQSVKVGRLAQALFELARLEHGNVQPALEQFSLVDLVQDVFQKFELP
AEARHIQLRATIPPRLPNVSADLGMIERVLTNLLDNAIRHTPAEGSIEVDLAHKDGKVSV
TISDTGPGIPPEQREGLFERPFSSGGAHRGGGLGLLIVQRMLQLNQSQIRLLDTAGTGTT
FCFELPTAAIRSSAASILM