Protein Info for BPHYT_RS22270 in Burkholderia phytofirmans PsJN

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 872 transmembrane" amino acids 7 to 25 (19 residues), see Phobius details amino acids 31 to 50 (20 residues), see Phobius details amino acids 106 to 129 (24 residues), see Phobius details amino acids 156 to 180 (25 residues), see Phobius details PF05650: DUF802" amino acids 321 to 373 (53 residues), 76.9 bits, see alignment 1.4e-25 amino acids 376 to 428 (53 residues), 60.6 bits, see alignment 1.6e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_4484)

Predicted SEED Role

"Methyl-accepting chemotaxis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T7V6 at UniProt or InterPro

Protein Sequence (872 amino acids)

>BPHYT_RS22270 membrane protein (Burkholderia phytofirmans PsJN)
MSRYRIDLVVFLAGLAAVCWIAAGYLGSNPLALAVTLLIGVCYLAGSLELHRYNQATATL
TQAVAGLSGPPPSLGTWLEPLHPSLRHAARLRVEGERVALPGPALTPYLVGLLVLLGMLG
TLLGMVVTLRGTGMALESATDLQAIRASLAAPVKGLGFAFGTSIAGVATSAMLGLLSALC
RRERLQAAQMLDVKIATILRIYSQSHQREEAFRLLQRQSEVMPTLVDRLQTMMSAIEQQS
LALNERQIASQEAFHGRAEAAYTRLASSVEQSLKESVADSTRAAGAALQPVMQATMAGLA
RETAVLHDTVTHAVQRQLDGLSSGFETTTTTVADIWNKALAGHQRSSEELAQHLRASLDR
FTDTFEQRSAGLLDGVSARLESTAGNVAQAWNEALARQESAGEKLAANNQQAFAAAAATF
EQHAASLLRGVGQSHVDLQTELASKDEQRLAAWTETLGAMAATLSKAWEQSGAQTASRQQ
EICETLAQTARDISAQTQAHASNTIAEIDRLVEAAAEAPKAAANLQAELASRDQQRLAAW
TDTLAAMAATLSKEWAQSGAQTASRQQEICEALAQTARDISAQTQAHASNTIAEIDRLVQ
AAAEAPKAAANLQAELASRDQQRLAAWTEALGAMANTLSAEWEQAGARTASRQQEICETL
AQTARDISAQTQAHASETIAEIGQLVQAASEAPKAAAEVVAELRQKLSDSMVRDTAMLQE
RSRLLETLETLLDAVNHASTEQRTAVDALVATSADLLERVGTRFTDKLEHETGKLGSVAA
QVTGSAVEVASLGEAFGTAVQVFGESNDKLVTHLQRIETALDKSLARSDEQLAYYVAQAR
EVIDLSVMSQKQIVEDLQQLAGRRASAGVEAA