Protein Info for BPHYT_RS22045 in Burkholderia phytofirmans PsJN

Annotation: peptide ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 312 transmembrane" amino acids 9 to 29 (21 residues), see Phobius details amino acids 96 to 121 (26 residues), see Phobius details amino acids 133 to 157 (25 residues), see Phobius details amino acids 177 to 198 (22 residues), see Phobius details amino acids 235 to 260 (26 residues), see Phobius details amino acids 280 to 306 (27 residues), see Phobius details PF00528: BPD_transp_1" amino acids 112 to 311 (200 residues), 126.2 bits, see alignment E=1.3e-40

Best Hits

Swiss-Prot: 51% identical to OPPB_ECO57: Oligopeptide transport system permease protein OppB (oppB) from Escherichia coli O157:H7

KEGG orthology group: K02033, peptide/nickel transport system permease protein (inferred from 100% identity to bpy:Bphyt_4437)

MetaCyc: 51% identical to murein tripeptide ABC transporter / oligopeptide ABC transporter inner membrane subunit OppB (Escherichia coli K-12 substr. MG1655)
3.6.3.23-RXN [EC: 7.4.2.6]; 7.4.2.6 [EC: 7.4.2.6]

Predicted SEED Role

"Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TFD9 at UniProt or InterPro

Protein Sequence (312 amino acids)

>BPHYT_RS22045 peptide ABC transporter permease (Burkholderia phytofirmans PsJN)
MLAYTLRRTLWAIPTILAVITACYLLLHLTPGGPFDTEKQLSAAVLANLNAKYHLDEPLW
LQYLHYLGSLLHGDLGPSFRYADWSVNDLVWKALPVSLGVGGVSVPIALVIGVALGTVAA
VRRDRFVDHFVMVLGNLGNVVPPFVLGPVLVWIFAILLKTSEGHGWLPAGGWGEGEWRYR
VLPIVLLTIINVAAIARVMRGSMIEVLSGNFIRTARAKGLPGRTIVLRHAMKPALMPVVS
LLGSICISSITAAVVTESVFALPGLGQLVVNGAINRDYTLVLGLVVLTTAVAVLFNLLVD
LAYAWLDPRIRY