Protein Info for BPHYT_RS21810 in Burkholderia phytofirmans PsJN

Annotation: histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 481 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 170 to 194 (25 residues), see Phobius details TIGR01386: heavy metal sensor kinase" amino acids 7 to 460 (454 residues), 476.4 bits, see alignment E=5.1e-147 PF00672: HAMP" amino acids 190 to 237 (48 residues), 33.6 bits, see alignment 6e-12 PF00512: HisKA" amino acids 243 to 307 (65 residues), 55.7 bits, see alignment E=6.1e-19 PF02518: HATPase_c" amino acids 353 to 461 (109 residues), 87.2 bits, see alignment E=1.5e-28

Best Hits

KEGG orthology group: K07644, two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC: 2.7.13.3] (inferred from 100% identity to bpy:Bphyt_4390)

Predicted SEED Role

"Signal transduction histidine kinase"

Isozymes

Compare fitness of predicted isozymes for: 2.7.13.3

Use Curated BLAST to search for 2.7.13.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TF95 at UniProt or InterPro

Protein Sequence (481 amino acids)

>BPHYT_RS21810 histidine kinase (Burkholderia phytofirmans PsJN)
MIRCMVPRTLRARLTALIIVSTSAILALSGLALYHVLRSCLESSSVEQMSSTMAALHTHL
SGIPTVHAIGGNAETVIDHLRGHPHMALAIYDTAGQRRLSTAGFKPYAPIAAIVLNGAPL
ALTRAGSNLRYLLQRVALNGGIGPPVLVAIQYDGTGDEALLRVYACTTVAIEVLGVLLAA
VFAYGIALVGLLPLRRLVARAEAMSTSGLAQPLPELHASGELKELEQAFNGMLTRLDESF
TRLSQFSSNLAHDMRTPLTNLLAAAQVALSQRRSAEDYRDVIESSVDEYRRLSHMIEDML
FLARSDQADAPPSLRLLDAVAEAERVAGYYETVAEDAQVEIKVTGEGTVLADLLLFQRAL
SNLLSNALAQGPPGTTIIIDCKEEPDWTTLSVSDSGAGIEARHLERIFERFYRVDPSRHG
SASGTGLGLAIVKSIMTSHGGQCGCESRPHVRTCFWLRFPNHDCSSHGMAARPGRDAVRK
A