Protein Info for BPHYT_RS21440 in Burkholderia phytofirmans PsJN

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 282 transmembrane" amino acids 49 to 73 (25 residues), see Phobius details amino acids 85 to 104 (20 residues), see Phobius details amino acids 128 to 156 (29 residues), see Phobius details amino acids 163 to 187 (25 residues), see Phobius details amino acids 195 to 215 (21 residues), see Phobius details amino acids 222 to 244 (23 residues), see Phobius details amino acids 250 to 271 (22 residues), see Phobius details PF01061: ABC2_membrane" amino acids 32 to 242 (211 residues), 99.7 bits, see alignment E=8.9e-33

Best Hits

KEGG orthology group: K09690, lipopolysaccharide transport system permease protein (inferred from 100% identity to bpy:Bphyt_4317)

Predicted SEED Role

"O-antigen export system permease protein RfbD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TF23 at UniProt or InterPro

Protein Sequence (282 amino acids)

>BPHYT_RS21440 sugar ABC transporter permease (Burkholderia phytofirmans PsJN)
MSFTYKHDGREESHPRAHFRDLFLLPWQQRQLIVALTRRDILSRYRGSIMGLAWSIVQPL
IMLAMYTVVFGTLLKSRWPGTDNSFQFAVILFVGLILFNFFAECLNRAPTIITTNANYVT
KVVFPLEILPWITVASAAFHFLTSFAVWLVFALCVYGKLQWTIVFLPALFIPLAFVGVGV
GWLFAATGVYVRDLTYVTTLLSSLLMFLSPVFYALDTLTPAFRALILTNPLTFIIEQARA
VMIAGELPDFVGIAIYLSCSIGFAWICLAWFQKTREGFADVL