Protein Info for BPHYT_RS21345 in Burkholderia phytofirmans PsJN

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 339 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 37 to 61 (25 residues), see Phobius details amino acids 117 to 145 (29 residues), see Phobius details amino acids 155 to 175 (21 residues), see Phobius details amino acids 222 to 243 (22 residues), see Phobius details amino acids 283 to 303 (21 residues), see Phobius details TIGR03476: putative membrane protein" amino acids 2 to 323 (322 residues), 356 bits, see alignment E=9.8e-111 PF03706: LPG_synthase_TM" amino acids 11 to 309 (299 residues), 98.2 bits, see alignment E=3.3e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_4298)

Predicted SEED Role

"Predicted integral membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TF04 at UniProt or InterPro

Protein Sequence (339 amino acids)

>BPHYT_RS21345 membrane protein (Burkholderia phytofirmans PsJN)
MSRAALILLSIGTALFVGLLAWQGFGSVASTLLTAGWGLALVAAFHLVPVLLDAGAISVL
FHPRRDGIHHDLTWRDALFARWIGESVNSLLPAGQIGGPVVMVRQLSQRGMRMRDAAAAI
TVSTTAQALAQIIFALGGLLLFGAYAAHGALHDLQTATLIATGVLGAMIVGFYYAQRRGL
FGRLLGVVSKVFGKRDWSSLMTRAEAVDAAVQAMYRERGRVAASFAMSLLGWIVGTVEVW
LALRFLGHPVDWVDALLLESLGQAIRGAAFMIPGSLGVQEGGYLLLAPLVGLPPDAALAL
SLAKRAREILLGLPGLLVLHFSERSWQRRRALGRVPVVD