Protein Info for BPHYT_RS21015 in Burkholderia phytofirmans PsJN

Annotation: transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 363 PF01965: DJ-1_PfpI" amino acids 82 to 215 (134 residues), 39.6 bits, see alignment E=7.3e-14 PF12833: HTH_18" amino acids 278 to 356 (79 residues), 85.3 bits, see alignment E=4.3e-28 PF00165: HTH_AraC" amino acids 323 to 353 (31 residues), 36.8 bits, see alignment (E = 4.7e-13)

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_4230)

Predicted SEED Role

"transcriptional regulator, AraC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TEU0 at UniProt or InterPro

Protein Sequence (363 amino acids)

>BPHYT_RS21015 transcriptional regulator (Burkholderia phytofirmans PsJN)
MPTARSSSPASPATAPTAHELVEQLDALPRALQARPSRSEAELSVGILLWPRFPMLSLAG
LCDALRHAADRGDQSRQLRCLWTIVGVQAEAVEASCGIPVRVQSAFPDVTQFDYVVVIGG
LLPHLDQVDRRYWDYLQQAAQAGIPLVGMCTGSFVLARAGLLEDRVACVHSFHLDDYRRM
FPSLRVITHADYLIDGNRITCAGGISVVELAARLISLHCGPDRASKVIHQMTVSRQGGSS
FVERRAALGYLSVDDATVRHAVLLMEENLEAPLNIAVIAKMIGTSVRNLERAFMSEMNAS
PNEFYRRMRLRYARWMLVNTARKITDIAYECGFADSAHFIRAFREAYGVTPGKLRASRSV
ATS