Protein Info for BPHYT_RS20870 in Burkholderia phytofirmans PsJN

Annotation: cysteine hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 189 transmembrane" amino acids 123 to 142 (20 residues), see Phobius details PF00857: Isochorismatase" amino acids 11 to 180 (170 residues), 82.2 bits, see alignment E=2.5e-27

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_4198)

Predicted SEED Role

"Amidases related to nicotinamidase" in subsystem NAD and NADP cofactor biosynthesis global

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TEQ9 at UniProt or InterPro

Protein Sequence (189 amino acids)

>BPHYT_RS20870 cysteine hydrolase (Burkholderia phytofirmans PsJN)
MQIPAIVPEQTALVVMHYQTDIMRLFPSVAPALLANTRKLCDAARAKGVGVYFARIHFSP
GYPEVSPLNRNGQGIKQLGLFVDDEIAPELGQRATEPLIIAHRASVFFGTDLQARLSAQG
IDTLIMVGIASTGVVLSSVAYASDADFRLFTVKDCCYDPDQVVHDHLFSTAFDSRTTVLS
LVDALSLLA