Protein Info for BPHYT_RS20815 in Burkholderia phytofirmans PsJN

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 499 PF00005: ABC_tran" amino acids 17 to 173 (157 residues), 96.3 bits, see alignment E=2.6e-31 amino acids 274 to 427 (154 residues), 71.3 bits, see alignment E=1.4e-23

Best Hits

Swiss-Prot: 45% identical to RBSA1_RUBXD: Ribose import ATP-binding protein RbsA 1 (rbsA1) from Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_4186)

Predicted SEED Role

"Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TEP7 at UniProt or InterPro

Protein Sequence (499 amino acids)

>BPHYT_RS20815 ABC transporter ATP-binding protein (Burkholderia phytofirmans PsJN)
MLTLRNVTKRFPGVLALNDVSIEIRPNEIVGLIGENGAGKSTLMKLLTGGYRQDSGEILR
DGKPLVIKNPRDATSEGIAMVYQEQSILPNLTVAENLFLGREEPFLTLGRVNWTKLKRAA
IAELATVHLDIDPLTLCEDLTFGQRQMVELAKALSLASHTDGMPVILLDEPTSVLEAAEI
EILFRLVRELKARASFVFVSHRLDELLSLSDRVYVMKDGKVVAGMASADASVGQLHELMV
GRTMDGQYYRENLQKPCRGEVALSVRNASLGHTLKGVSFDVHCGEVFGVAGVVGSGREEL
CRVIAGLESLDAGEVLVGETRLRAQATHAVSLGIGYVPRERKVEGLVTQMSVAENLTLPR
LAAVSRSGVVNKRSERAVANEWIERLHIKTPGPSASCRNLSGGNQQKVVLAKWRFAGSRI
LVLDHPTRGLDVGAKEEVYQLIRELTAEGVAVVLTGDTLEEILGLSHRVMVMRDGRAQKI
LACEVGHKPSQIDVVEHMV