Protein Info for BPHYT_RS20795 in Burkholderia phytofirmans PsJN

Annotation: sorbosone dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF00171: Aldedh
  • amino acids 37 to 490 (454 residues), 545.1 bits, E=5.9e-168

Best Hits

Swiss-Prot: 44% identical to AL2C4_ARATH: Aldehyde dehydrogenase family 2 member C4 (ALDH2C4) from Arabidopsis thaliana

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_4182)

MetaCyc: 56% identical to L-sorbosone dehydrogenase subunit (Gluconobacter oxydans UV10)
1.1.1.M58 [EC: 1.1.1.M58]

Predicted SEED Role

"Aldehyde dehydrogenase (EC 1.2.1.3)" in subsystem Entner-Doudoroff Pathway or Glycerolipid and Glycerophospholipid Metabolism in Bacteria or Methylglyoxal Metabolism or Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate (EC 1.2.1.3)

MetaCyc Pathways

• 2-keto-L-gulonate biosynthesis (4/4 steps found)
• ethanol degradation II (3/3 steps found)
• ethanol degradation IV (3/3 steps found)
• putrescine degradation V (2/2 steps found)
• superpathway of NAD/NADP - NADH/NADPH interconversion (yeast) (6/8 steps found)
• superpathway of ornithine degradation (6/8 steps found)
• phytol degradation (3/4 steps found)
• superpathway of glycol metabolism and degradation (5/7 steps found)
• ethanol degradation III (2/3 steps found)
• hypotaurine degradation (2/3 steps found)
• putrescine degradation IV (2/3 steps found)
• superpathway of L-arginine and L-ornithine degradation (9/13 steps found)
• ethylene glycol degradation (1/2 steps found)
• putrescine degradation I (1/2 steps found)
• Entner-Doudoroff pathway II (non-phosphorylative) (6/9 steps found)
• mitochondrial NADPH production (yeast) (3/5 steps found)
• octane oxidation (3/5 steps found)
• L-tryptophan degradation X (mammalian, via tryptamine) (2/4 steps found)
• fatty acid α-oxidation I (plants) (2/4 steps found)
• putrescine degradation III (2/4 steps found)
• superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation (7/11 steps found)
• histamine degradation (1/3 steps found)
• 3-methyl-branched fatty acid α-oxidation (3/6 steps found)
• dopamine degradation (2/5 steps found)
• aromatic biogenic amine degradation (bacteria) (4/8 steps found)
• D-arabinose degradation II (1/4 steps found)
• serotonin degradation (3/7 steps found)
• ceramide degradation by α-oxidation (2/7 steps found)
• sphingosine and sphingosine-1-phosphate metabolism (4/10 steps found)
• alkane oxidation (1/6 steps found)
• limonene degradation IV (anaerobic) (1/7 steps found)
• noradrenaline and adrenaline degradation (4/13 steps found)
• ceramide and sphingolipid recycling and degradation (yeast) (4/16 steps found)
• superpathway of pentose and pentitol degradation (22/42 steps found)

KEGG Metabolic Maps

• 1,2-Dichloroethane degradation
• 3-Chloroacrylic acid degradation
• Arginine and proline metabolism
• Ascorbate and aldarate metabolism
• Butanoate metabolism
• Fatty acid metabolism
• Glycerolipid metabolism
• Glycolysis / Gluconeogenesis
• Histidine metabolism
• Limonene and pinene degradation
• Lysine degradation
• Propanoate metabolism
• Pyruvate metabolism
• Tryptophan metabolism
• Urea cycle and metabolism of amino groups
• Valine, leucine and isoleucine degradation
• beta-Alanine metabolism

Isozymes

Compare fitness of predicted isozymes for: 1.2.1.3

Use Curated BLAST to search for 1.1.1.M58 or 1.2.1.3

Sequence Analysis Tools

See B2TEP3 at UniProt or InterPro

Protein Sequence (502 amino acids)

>BPHYT_RS20795 sorbosone dehydrogenase (Burkholderia phytofirmans PsJN)
MSNLNELAATLRLPAEPLRTPMFIDGKDYAGNTGEFVTRKSPGHGVPVTATPRACVDDLN
AAVASARRAFDDGRWSRLSGEQRATVLLKTARLIRDKVETLAYLETLESGKPIGQSRGEI
NAAAGIWEYAAGLARVVHGDSHDTLGADLFGLTVRQPIGVVGIVTPWNFPFFILSERLPF
VLAAGCTAVVKPAELTSTTTLKLAALLTEAGLPDGVVNVVTGLGAVVGQALAEHMDVDMM
SFTGSTPVGRSVLAAAGGNMKKVGLELGGKNPQIVFADADLDDAADAIAFGICFNAGQCC
VSGSRLVVHRSVEEELVARVKAVFEKVRVGDPLDASNHVGAIVEARQFDKIRGFIDAGRR
DGAQLVHGGESTSHGERFFIQPTLFRNVQPQSALAQEEIFGPVLSVTSFDTFEEAIQLAN
GVPYGLAASIWTRDLQGAISSFREVQAGRIWVNCTITGGPEMPIGGVKQSGIGRETGRYG
VEEYTELKSVHVQLGKRPRWIA