Protein Info for BPHYT_RS20405 in Burkholderia phytofirmans PsJN

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 443 transmembrane" amino acids 23 to 41 (19 residues), see Phobius details amino acids 54 to 73 (20 residues), see Phobius details amino acids 89 to 108 (20 residues), see Phobius details amino acids 114 to 135 (22 residues), see Phobius details amino acids 147 to 170 (24 residues), see Phobius details amino acids 181 to 202 (22 residues), see Phobius details amino acids 250 to 271 (22 residues), see Phobius details amino acids 291 to 309 (19 residues), see Phobius details amino acids 316 to 333 (18 residues), see Phobius details amino acids 339 to 359 (21 residues), see Phobius details amino acids 370 to 393 (24 residues), see Phobius details amino acids 404 to 423 (20 residues), see Phobius details PF07690: MFS_1" amino acids 28 to 390 (363 residues), 157.9 bits, see alignment E=1.7e-50

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_4101)

Predicted SEED Role

"Major facilitator family transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TEG4 at UniProt or InterPro

Protein Sequence (443 amino acids)

>BPHYT_RS20405 MFS transporter (Burkholderia phytofirmans PsJN)
MTSALTTAADPLESAVSKVKRHVLPLFLIMFIANYIDRVNIGFVNSHMQTDLGIGAAAYG
LGSGLFFIGYALFEVPSNVLMQKYGARAWLTRIMGTWGLVAAAMAFVWNDTSFYVLRFLL
GIAEAGFFPGVVFYFTQWLPQKERGKAVAVFLGGSALASVLSGPITGSLLSIRGFGLHGW
QWMFLVEGGFSIVLCAVSWMLLKSRIRDASWLTAEEQHVLETSIAAEQAAREAHGGAHLP
AMKLLKDPQILLFCFLYFAIQLTIYAATFWLPTIIRKMGGLSDFQVGMLNAIPWLIAMFA
MYCFALLSAKWRFQQAWLAVALVIAACGLFASTSGNPVLSFVAICFSAIGFKAAASLFWP
IPQGYLDARVAAAVIALINSVGNLGGFFAPAAFGYLQQHTGSITGGLYGLAVASLIAAAA
GFLTRNRRVNHDALPESLQHKVH