Protein Info for BPHYT_RS20260 in Burkholderia phytofirmans PsJN

Annotation: cytochrome C551 peroxidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3230 PF00501: AMP-binding" amino acids 16 to 371 (356 residues), 208.3 bits, see alignment E=3.3e-65 amino acids 1083 to 1445 (363 residues), 260.5 bits, see alignment E=4.7e-81 amino acids 2622 to 2982 (361 residues), 300.7 bits, see alignment E=2.9e-93 TIGR01733: amino acid adenylation domain" amino acids 38 to 444 (407 residues), 346.5 bits, see alignment E=3.8e-107 amino acids 1104 to 1516 (413 residues), 375.1 bits, see alignment E=7.7e-116 amino acids 2648 to 3055 (408 residues), 456.4 bits, see alignment E=1.7e-140 PF13193: AMP-binding_C" amino acids 429 to 501 (73 residues), 28.4 bits, see alignment (E = 5e-10) amino acids 3039 to 3109 (71 residues), 33.9 bits, see alignment (E = 9.7e-12) PF00550: PP-binding" amino acids 532 to 596 (65 residues), 25.9 bits, see alignment (E = 1.9e-09) amino acids 1606 to 1666 (61 residues), 50.2 bits, see alignment (E = 4.9e-17) amino acids 3138 to 3201 (64 residues), 33.9 bits, see alignment (E = 6.3e-12) PF00668: Condensation" amino acids 625 to 1063 (439 residues), 266.8 bits, see alignment E=6.9e-83 amino acids 1692 to 2128 (437 residues), 159.6 bits, see alignment E=2.3e-50 amino acids 2163 to 2595 (433 residues), 280.5 bits, see alignment E=4.8e-87 TIGR01720: non-ribosomal peptide synthase domain TIGR01720" amino acids 1995 to 2152 (158 residues), 103.2 bits, see alignment 2.5e-33

Best Hits

Predicted SEED Role

"Non-ribosomal peptide synthetase modules, pyoverdine??" in subsystem Siderophore Pyoverdine

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TED5 at UniProt or InterPro

Protein Sequence (3230 amino acids)

>BPHYT_RS20260 cytochrome C551 peroxidase (Burkholderia phytofirmans PsJN)
MTSFPIALHHQIHAMARIDPDAPALASFTPHTVRLTRGELDSRAARLAAQLRAAGVTTEV
RVGVCVARSCDLFVALLAVLKAGGVFVALDPRHPAARLDWVARDAGLMHGIVDGSADAAM
RARFTQCFDVASAAATDAAAPRFDGDEANTPVHPRAAAYMIYTSGSTGTPKAVAVEHGPL
AAHGEALADSLPIGANDRVLHFASVNFDVSIEAWLVPLAVGGSVVISDPPPFAPETTHAF
MLREGITNTTLPPAYVREFANVCERLGVPPSLRTLLFGGEAMSQDSFDEIRRVFPAVRLV
NGYGPTEAVISPMLWPVDPGMTPLLDDGNGFASLPIGWPIGRRVARIDGAARQGESGELL
LGGVCLARGYHGRAALTAERFLPDASGEPGERIYRTGDLARERVDGSFDYLGRIDDQVQV
RGVRVEPGEIAACLLTHPAVADAGVLAETAGGRTQLIACFVLHEELDDAALQTHLAAHLP
QAWMPHRLVRFERLPYTLNGKLDRAALRDFIAKMPAVVHVNHVAPRTATETRLAALWQTL
LSDPAPIGCADRFFARGGDSLAAMQLQAAIRIEWRVNLRLDALFDDQPLEALARLIDDSE
TETSMGSHAITVVQTTDAPFVDRAASFAQQRFWVLAQTQDAGAAYHVAVQWDVQGALEIG
TLQRALDCLIARHQAWRTTLVESDDGIVIQRIHARLPVPVVQFDLRACDEAERTSRLVEL
TEQQVGTAFDLSKGPLVRAALVTLTNDTQRFLLTTHHSISDGWSSRCAFDELRAAYAAFA
VGSEPQLPTLAIQYADYAQWQRDWLAAGEADRQLAYWRDALRDAPEALALPLDRPRSPEH
DYRGGRVALRLPIALSEAVRETARRVQASPFTVLLAAFDAWLYRLTGTSDIVVAAPIAHR
QRAETAPLVGLFLNTLALRARVAPDQSFAALLDGVRRSAFDAFAHQDVPFDQVLDAVKPP
VRRGDAWLKVKFAQQFDLELSAELPGASVRMSPGLDLAARFDYALDFTDDSRGIELVVAY
ALDGIDEATAHAWLHSYAALVADAVRDPQRAIAELDCADSADYRAARRGREFQPAADNVL
ALFARHARKTPDRVALADAETQLTYAEVDAASDRIAFALRQRGVGAEQPVAVCIERSVRF
AVALIGVMKSGAYVVPLDPAAPRERLTASVEACGARWILTANQTQAMAAVGAASTLDFDA
LTQASSPASVEEATASPATPLANQAAYLIFTSGSTGTPKGVVISHGALADYVEGMLDELA
FAADASMAMVSTVAADLGHTTLFGALCSGRTLHLLPAQCAFDPDRFAHEMRTRNVGILKI
VPSHLHALLDAQHPADVLPAHALVMGGETLPWSLVERIAALNPTCRVINHYGPTEATVGA
LTCDTSASAQAALRTLSTRSAQAVPLGLPLPNAYACVLDSHGASVPPGAIGELYLGGPGL
ARGYLNRAAATAERFVPNPFAPGERLYRTGDRVRLRADRRLDSLGRLDDQVKIRGYRVEP
GEVSAALRALDGIVQAETLAVEHDGRLRLASFVALASDARFDEAALRATLSARLPDYMVP
AVLQHVAALPVTANGKVDRAALRALATAPAPAVAAGDAPQNATEEALAAVWKDVLKAERV
GRDDNFFELGGDSILVLQVIARSRKRGVRFTPKQLFDAPTLAQLARVATTVDVTAQAAPA
ASKSQPVPAKAEHSATLTPAQLRFFALDIPRRGHWNQSIELDTQVPFDFDAFARAFETLL
TYHEIFRQRFTPVGAQGEWRLELAERAFETLPLAASSARDEADALAQFDALQSTLDLTHG
PLVCALAALLPDGTTKLYLAIHHIIVDGVTWRVLLDDLDAAYRAACERRSVRLASTGTSA
QEWAARLARAALDIKNSPFAAELPYWAALAAPYDDLPLDRPQAKATNADAQSVIQTIDAD
LTRAALTEANAAYRTQMIELLIAALAQSLDMPVCRIELEGHGREAVFDDVDVSRTPGWLT
SHYPVQFTLESTPAATLGAVKDTLRAVPNKGLGFGVLCHYGDPATRATLAAVPRPHVTFN
YLGQFDAPREAALVPRFGGAGRERDPAGPIGNALAIHAYIDGDATRTLKIHWVYGATQFE
RATVEAIAQRFESALAALTAACAARLAQRGGGATPGDYPLARMGGLTQAALERLPLDLRS
IDDIYPLSPMQHGILFHSLFAPEQSTYVNQLVATLIDPDVERLRAAFEAAVPRHDILRTS
FTPDEATPMQIVHRQARMPVDILDWRERGAHAHDAFEAWLRADRARGFDLTSPPLMRVAL
IRITDDAWRLVWTRHHLLLDGWSTARFFADVLRDYIEPPRPQPFASPAKTRYRDFIAWLA
ARDTDSERAFWLQRLASLDEPTLVAERESASGRESQHLTRRETIDAATTARLTETARRLK
VTVNTMVQGAWALALQRMTHHTAVAFGATVAGRPDALPDVDTVLGLFINTLPVITAPLPQ
RRASEWLHDLQRDNAAAAEHAHTPLYEIQQWAGQGGGALFDTLVVFENYPVDEAWQGRDE
RALKLRELRNIEATDFALTLVIEAGATLTIDYGYDAAQLDEARVAALHRAFAACLAGLIA
DADAPLGTISISTADDLAALARFNSTEQVWPGTQQQALHRQFEQKALASPEAIALEFVDA
LGHTQQMSYGELDANADRVAASLIQAGVRADTAVALCVERSFDMVVALIGVLKAGAAYLP
IDPDYPADRIAYLLDDAKPAVVLTQPHLLERVMAAVDRTRVSILAVDALRGADFTLSAPV
PVAPDQLAYLIYTSGSTGKPKGAGNTHRALANRIAWMQDVYRLDANDVVLHKTPFGFDVS
VWEFVWPLAIGAKLAIAAPGDHRDPARLVAAIETHRVTTLHFVPSMLAAFAAHLEDFRAA
ARCASVERIVASGEALAPELVARVAGQLPHARLYNLYGPTEAAIDVSHWTCDARDADAAS
VPIGHPIANLQLQVLDAALQPLPQGAIGELYLGGVGLARGYLGRAALTAERFVPDPFSRG
ARLYRTGDLARRRADGALDYLGRMDTQVKLRGQRIEPGEIEALLRATPGVHDAVVIVRDE
QLIGYVACGADNALDTQALLDDLRAQLPSYMVPSYLIAMDALPVTPNGKCDRHALPVPVR
GTASESATCVAATETERELAEIWKRVLRVDTIGRDDDFFALGGHSLLATQANAQANLHWT
LILPLRTLFDERTLQRCAAAIDRALAERDAHGAGDTASAIDALLDEFELQ