Protein Info for BPHYT_RS19640 in Burkholderia phytofirmans PsJN

Annotation: general secretion pathway protein L

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 475 transmembrane" amino acids 50 to 59 (10 residues), see Phobius details amino acids 189 to 205 (17 residues), see Phobius details amino acids 332 to 354 (23 residues), see Phobius details TIGR01709: type II secretion system protein L" amino acids 6 to 473 (468 residues), 289.1 bits, see alignment E=2.8e-90 PF05134: T2SSL" amino acids 37 to 146 (110 residues), 33.3 bits, see alignment E=3.3e-12 PF12693: GspL_C" amino acids 327 to 440 (114 residues), 37.3 bits, see alignment E=2.5e-13

Best Hits

KEGG orthology group: K02461, general secretion pathway protein L (inferred from 100% identity to bpy:Bphyt_3945)

Predicted SEED Role

"General secretion pathway protein L"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T7P7 at UniProt or InterPro

Protein Sequence (475 amino acids)

>BPHYT_RS19640 general secretion pathway protein L (Burkholderia phytofirmans PsJN)
MSTLIVLLPPRDPAVPSQEWQLPELPFVLLDKSGRAQRTGRSALALLPRASTTVLMVAAR
DLLMMPATLPPLRGPRLRQALPNIVEDQLIQDPQTCHIAVDPKPLAGGRQLLAIIDRGWF
RYICESFTNAGHRSLRAVPVTRCLPQAAALDADVPAEVAETVNAGEPAMAGAADVATSLP
GVAPVLTPGVVAAVPMVAAVLGAVVQTAPALLLEGVTNSAGERGVPRVELAIARGVQGEG
LAVPASAVNATLSALAGAAPVSLHMLTEVPGNEPSLAPNSPARLAAYIHGASPLPFEQLA
RRALECRFDLCQFEFASQPWRLDRATLRRLRLPVLLAVGALLVAIIGANAQWLMLARQRD
AINTQMTELLLNTFPKTTVVLDAPDQMSRQLQQLRVAAGELSPDDFLPLADGLARSLPPV
PVNGIAALDYHDRRLDVNFKPEIKLDPDFAKRLARNGLSGAIDSNTGKWTIRNGQ