Protein Info for BPHYT_RS19480 in Burkholderia phytofirmans PsJN

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF13458: Peripla_BP_6" amino acids 34 to 368 (335 residues), 368 bits, see alignment E=1.1e-113 PF13433: Peripla_BP_5" amino acids 34 to 345 (312 residues), 57.6 bits, see alignment E=1.8e-19 PF01094: ANF_receptor" amino acids 56 to 359 (304 residues), 41.2 bits, see alignment E=1.7e-14

Best Hits

KEGG orthology group: K01999, branched-chain amino acid transport system substrate-binding protein (inferred from 100% identity to bpy:Bphyt_3913)

Predicted SEED Role

"Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T7L9 at UniProt or InterPro

Protein Sequence (404 amino acids)

>BPHYT_RS19480 ABC transporter permease (Burkholderia phytofirmans PsJN)
MKKNPLARLATLCFAVAAGAALTMGSAQAADDAVKIGFITDMSGLYADIDGQGGLEAIRM
AVADFGGKVNGKPITVVYADHQNKADIAASRAREWFDRDGVDLLIGGTNSATGLSMNTVA
GEKKKVYISIGAGADTLTNEQCTPYTIHYAYDTTALAKGTGSAVTKQGGKTWYFLTADYA
FGKALEKNTSDVVKANGGQVLGTVRHPLSASDFSSFLLQAQASKAQILGLANAGGDTINS
IKAAKEFGITKTMKLAALLMFIDDVHSLGLETTQGLVLTDSWYWNKDATTRKWAQRYFDK
MRKMPSSLQAADYSATMTYLNAVKAVGSTDSDKVMAQLKKTKIDDFYAKGYIRQDGSMIH
DMYLMQVKTPAESKEPWDYYKITATIPGEQAFTTKAETRCALWK