Protein Info for BPHYT_RS19300 in Burkholderia phytofirmans PsJN

Annotation: cytochrome C

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 transmembrane" amino acids 16 to 38 (23 residues), see Phobius details PF13442: Cytochrome_CBB3" amino acids 78 to 153 (76 residues), 57.4 bits, see alignment E=2.2e-19 amino acids 222 to 295 (74 residues), 66.2 bits, see alignment E=4e-22 PF00034: Cytochrom_C" amino acids 79 to 155 (77 residues), 31.7 bits, see alignment E=4.8e-11 amino acids 223 to 297 (75 residues), 26.8 bits, see alignment E=1.6e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_3876)

Predicted SEED Role

"Cytochrome c5"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T7I2 at UniProt or InterPro

Protein Sequence (300 amino acids)

>BPHYT_RS19300 cytochrome C (Burkholderia phytofirmans PsJN)
MSEAPHGAPIKTPGQLIAAIIASFAVPIVIIVLLVIYVDNSTRTGAGTDSLSEAEVTARI
KPFAQVDIRDANAPRVYKSGEEVYKAVCSACHASGAAGAPKFTNTADWAPRIAQGFDTLL
HTALAGKGAMPPRGGTSPDDYSDFEIARAVAYMANNSGGSFPEPAQPAAGAPAAAASGAA
AAAPAGASDAGAAQAAAAMAAMASVPQAAAPAAGGTQSADASQAGKALYQQVCQACHAAG
VLNAPKFGDKDAWAPRLKEPMDTVYNYALHGKGAMPPKGGSTASDADVKAAVDYMVSAVK