Protein Info for BPHYT_RS19100 in Burkholderia phytofirmans PsJN

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 790 PF13432: TPR_16" amino acids 36 to 88 (53 residues), 28.9 bits, see alignment 1e-09 amino acids 188 to 245 (58 residues), 34.5 bits, see alignment 1.8e-11 amino acids 277 to 314 (38 residues), 17 bits, see alignment 5.4e-06 PF13181: TPR_8" amino acids 57 to 88 (32 residues), 14.3 bits, see alignment (E = 3.2e-05) PF13428: TPR_14" amino acids 215 to 255 (41 residues), 24.7 bits, see alignment 1.9e-08 PF14559: TPR_19" amino acids 291 to 351 (61 residues), 27.2 bits, see alignment 3.2e-09 PF13844: Glyco_transf_41" amino acids 391 to 548 (158 residues), 81.7 bits, see alignment E=2.9e-26 amino acids 569 to 738 (170 residues), 68.8 bits, see alignment E=2.4e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_3835)

Predicted SEED Role

"Predicted O-linked N-acetylglucosamine transferase, SPINDLY family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T7E2 at UniProt or InterPro

Protein Sequence (790 amino acids)

>BPHYT_RS19100 hypothetical protein (Burkholderia phytofirmans PsJN)
MTLLYEQPPAEPLTPEQQLEQDIALVLQTALDHHHKGEFEDAHALYRAILDANPKHADVL
YNLGVLLGQTARTAEALPLFEQCLGLHPHNGQYWAAYISALIDAGETAAAWLALEMGQKQ
GLKGPAVDGLIVRMANPGKVIHTLPVAAQKPQAEPAAATETPPAAESTRTTIASGRRVSQ
QETNRYTALYNKGNVVEAVKLARSLTQRFPADGNSWRWLGIALHRLGRYDEALAPLRKAA
ELFPEELESRTVLADTLRLKGLPAETEQECRKILAINPDYAEAQRIFGMSLVHQGRVAEG
LAAARRAIELAPNNSTAYSTLGVLLLDLGFVSEAEKEFRAALEKDPKDHIAANNFLFTLS
HNPEIDHGTLFAEHTNFARQHEDPVRAQWPRHVNKRSPDRKLKIGLVSGDLFRHAVASYL
LPIMEHLAKDPNLSLHVYNNHIAEDDYTQLLRNCADEWHQITGMPDAQLANKIRDERIDI
LFDLSGHTGRNRLLTFARKPAPIQVTWMGYPGTTGLSAMDYYLADKYGVPFGPAENQFSE
KIVHLPSSATFLPEQSAPPVNILPAMHNGYVTFGSFNRLNKLRRDVIALWAELLRAQPTA
KMLLGAIATDEDEQLLIDWFAGEGIERERLMFRRRSSIPVYLQQHFHVDICLDTFPYTGS
TTVLNSLWMGVPTLTIAGDTLASRAGTTWMSHVGLDDFVVANKEEFVARGVALASDLPAL
ADIRTGLRERCAASAAFRPEVVAAGVSRALRIMWQRWCAGEPAAAFEVSIEDVTGAASEA
PVLSEQGESK