Protein Info for BPHYT_RS19020 in Burkholderia phytofirmans PsJN

Annotation: transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 186 PF05280: FlhC" amino acids 1 to 172 (172 residues), 303.4 bits, see alignment E=2.2e-95

Best Hits

Swiss-Prot: 88% identical to FLHC_BURSC: Flagellar transcriptional regulator FlhC (flhC) from Burkholderia sp. (strain CCGE1002)

KEGG orthology group: K02402, flagellar transcriptional activator FlhC (inferred from 100% identity to bpy:Bphyt_3819)

Predicted SEED Role

"Flagellar transcriptional activator FlhC" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T7C6 at UniProt or InterPro

Protein Sequence (186 amino acids)

>BPHYT_RS19020 transcriptional regulator (Burkholderia phytofirmans PsJN)
MAYKSVVLEVREITLAIQLIELGARLQLLEAETSLSRDRLIKLYKELKGVSPPKGMLPFS
TDWFMTWQPNFHSSLFYNIYRFMAGHGGCPTIQSIVKSYRLYLEHVQLHDDEPVLSLTRA
WTLVRFFDSRMLQMTACCRCGGHFVAHAHDPQHAFVCGLCQPPSRAGKTKKFADARARES
LAALEA