Protein Info for BPHYT_RS18830 in Burkholderia phytofirmans PsJN

Annotation: flagellar biosynthesis protein FliQ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 89 signal peptide" amino acids 12 to 12 (1 residues), see Phobius details transmembrane" amino acids 13 to 39 (27 residues), see Phobius details amino acids 50 to 72 (23 residues), see Phobius details TIGR01402: flagellar biosynthetic protein FliQ" amino acids 1 to 87 (87 residues), 109.1 bits, see alignment E=9e-36 PF01313: Bac_export_3" amino acids 6 to 77 (72 residues), 108.8 bits, see alignment E=5e-36

Best Hits

Swiss-Prot: 60% identical to FLIQ_ECOL6: Flagellar biosynthetic protein FliQ (fliQ) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K02420, flagellar biosynthetic protein FliQ (inferred from 99% identity to bug:BC1001_3382)

Predicted SEED Role

"Flagellar biosynthesis protein FliQ" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T788 at UniProt or InterPro

Protein Sequence (89 amino acids)

>BPHYT_RS18830 flagellar biosynthesis protein FliQ (Burkholderia phytofirmans PsJN)
MNQESVMTLAHQAMYVGLLLAAPLLLVALVVGLVVSLFQAATQINESTLSFIPKLLAIAV
TMVIAGPWMLTTMLDYLRQTLTNIPTLVN