Protein Info for BPHYT_RS18785 in Burkholderia phytofirmans PsJN

Annotation: flagellar assembly protein FliH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 225 PF02108: FliH" amino acids 89 to 215 (127 residues), 124.1 bits, see alignment E=1.7e-40

Best Hits

Swiss-Prot: 33% identical to FLIH_SALTY: Flagellar assembly protein FliH (fliH) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K02411, flagellar assembly protein FliH (inferred from 100% identity to bpy:Bphyt_3772)

Predicted SEED Role

"Flagellar assembly protein FliH" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T779 at UniProt or InterPro

Protein Sequence (225 amino acids)

>BPHYT_RS18785 flagellar assembly protein FliH (Burkholderia phytofirmans PsJN)
MSDQNSAAKERLSAYQRWEMASFDPVPPAPPEPEVDDGAFEAELERLRDAAHAQGIASGH
VAGQALGYQAGYDQGHAQGFEQGQSEAREEAARLAALAETFKAALDGAQGAISETLVALA
LDIAQQVVRQHVQHDPTALIAAAREVLAAEPTLVGAPALIVSPADLPVVEAYLMEELQTR
GWTVRTDPAVERGGCRAQANTGEVDAGIDTRWERVAAALGKVSTW