Protein Info for BPHYT_RS18765 in Burkholderia phytofirmans PsJN

Annotation: flagellar biosynthesis protein FliS

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 144 TIGR00208: flagellar protein FliS" amino acids 8 to 125 (118 residues), 94.3 bits, see alignment E=3.1e-31 PF02561: FliS" amino acids 10 to 127 (118 residues), 128.3 bits, see alignment E=8.7e-42

Best Hits

Swiss-Prot: 52% identical to FLIS_SALTY: Flagellar secretion chaperone FliS (fliS) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K02422, flagellar protein FliS (inferred from 99% identity to bxe:Bxe_A0168)

Predicted SEED Role

"Flagellar biosynthesis protein FliS" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T775 at UniProt or InterPro

Protein Sequence (144 amino acids)

>BPHYT_RS18765 flagellar biosynthesis protein FliS (Burkholderia phytofirmans PsJN)
MFSPGHSGANAYARVGVETGVMGASPHRLIVMLYQGARQAIAQARMHLQQGNVPARGEAV
GKAIQIVESGLQQSLNLEAGGEIAERLNALYSYMSRRLLEANIKQSEAMLVEVDGLLATL
EEAWIGIAPEIARMAAQPAAESMR