Protein Info for BPHYT_RS18245 in Burkholderia phytofirmans PsJN

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 540 transmembrane" amino acids 104 to 124 (21 residues), see Phobius details PF01266: DAO" amino acids 208 to 286 (79 residues), 30.3 bits, see alignment E=1.3e-10 PF01593: Amino_oxidase" amino acids 214 to 270 (57 residues), 25.2 bits, see alignment 4.1e-09 PF21688: FAD-depend_C" amino acids 288 to 483 (196 residues), 276.8 bits, see alignment E=5.7e-86

Best Hits

Swiss-Prot: 52% identical to Y202_CLOB8: Uncharacterized protein Cbei_0202 (Cbei_0202) from Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)

KEGG orthology group: K07137, (no description) (inferred from 100% identity to bpy:Bphyt_3661)

Predicted SEED Role

"NAD(FAD)-utilizing dehydrogenase, sll0175 homolog"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T6M9 at UniProt or InterPro

Protein Sequence (540 amino acids)

>BPHYT_RS18245 hypothetical protein (Burkholderia phytofirmans PsJN)
MLRLSEIKLPLDHPESALEAAVRARLAELGVAADGLIRYTVFRRAHDARKRADIKLTYIV
DVEVTDEAAALKRLADVPHCGVTPDMTYKFVARAPAQMTAPRPVVIGMGPCGLFAGLILA
QMGFRPIILERGKAVRERTKDTFGLWRKSVLNPESNVQFGEGGAGTFSDGKLYSQIKDPK
HYGRKVLDEFVRAGAPEDILFLSRPHIGTFRLVSMVEKMRATIHELGGEVRFETRVDDIE
IDQGKVRGLKLSTGETLRCDHVVLAVGHSARDTFQMLNDRGVYIEAKPFSLGFRIEHPQG
LIDRSRFGKFAGHKQLGAADYKVVHHCSNGRAVYSFCMCPGGTVVAATSEPGRVVTNGMS
QYSRAERNANAGIVVGITPDDYPGGPLAGIAFQRKWEERAFELGGGNYMAPGQLVGDFIA
GRPSTSLGSVVPSYKPGVHPTDLSTALPDYVIEAIREALPQMDKKIAGFAMHDAVLTGVE
TRTSSPIRVRRRDDYQSMNVEGLYPAGEGAGYAGGIYSAAIDGIEVAEALALKMAEAQTA