Protein Info for BPHYT_RS17790 in Burkholderia phytofirmans PsJN

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 583 transmembrane" amino acids 34 to 54 (21 residues), see Phobius details amino acids 76 to 98 (23 residues), see Phobius details amino acids 158 to 182 (25 residues), see Phobius details amino acids 192 to 210 (19 residues), see Phobius details amino acids 279 to 298 (20 residues), see Phobius details amino acids 303 to 326 (24 residues), see Phobius details PF06472: ABC_membrane_2" amino acids 28 to 303 (276 residues), 208.1 bits, see alignment E=2.7e-65 PF05992: SbmA_BacA" amino acids 40 to 353 (314 residues), 159.5 bits, see alignment E=2.2e-50 PF00005: ABC_tran" amino acids 402 to 532 (131 residues), 58.5 bits, see alignment E=1.8e-19

Best Hits

KEGG orthology group: K02471, putative ATP-binding cassette transporter (inferred from 100% identity to bpy:Bphyt_3576)

Predicted SEED Role

"ABC transporter, fused ATPase and inner membrane subunits (EC 3.6.3.27)" (EC 3.6.3.27)

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.27

Use Curated BLAST to search for 3.6.3.27

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T6Y3 at UniProt or InterPro

Protein Sequence (583 amino acids)

>BPHYT_RS17790 ABC transporter ATP-binding protein (Burkholderia phytofirmans PsJN)
MTPNTSATPVLPPDEKVSAWSLIKPYWVSEERKTAWGLLIAIIVMNLLVVWINVRLNRWS
ADFYNALQTKNVRDFPHLLMVFSGLAFGFIILAVYGRYLRQMLGFRWRQWLTTRYLNEWL
NDSAFYRIERDRLADNPDQRISDDLQSFATSTLSLTLDLLSTVVTLVSFITILWSLAGAL
TISLGGMPIEIPGYMVWAAALYAVVGSLIIQKVGHPLVPINYQAQKVEADFRFGLIRLRE
NAEQIAFYNGMDTEKANAHSLFGRIRDNWWQVMKYTKRLTFVLSFYGQIAIIFPLVVAAP
RYFAGAFTFGVLMQISSAFGTVSDSFSWFINSYGTLVEWRATVNRLREFKRVVHAPRLKE
SVSPATAHGGINLHFVDEDKLSTEGLKLALPNGNPLSRIRDVAIQPGSRWLVRGPSGSGK
STLMRALAGLWPFGDGSIDAPVNARMMFIPQVSYMPIGTLKAALAYPSAASTYTDDECRE
ALIVCHLSEYADRLQESGHWTRILSPGEQQRLAAARVLLHKPDYLFLDEATSALDAENEA
RLYRLFTERLPKAAIVSVAHRESLAAFHDETLDVERSGEAVAA