Protein Info for BPHYT_RS17615 in Burkholderia phytofirmans PsJN

Annotation: Glutathione S-transferase domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 203 PF02798: GST_N" amino acids 3 to 72 (70 residues), 63 bits, see alignment E=8.2e-21 PF13417: GST_N_3" amino acids 4 to 77 (74 residues), 63.3 bits, see alignment E=6.4e-21 PF13409: GST_N_2" amino acids 9 to 73 (65 residues), 68 bits, see alignment E=2.6e-22 PF00043: GST_C" amino acids 117 to 188 (72 residues), 28 bits, see alignment E=6.2e-10

Best Hits

Swiss-Prot: 45% identical to SSPA_ECO57: Stringent starvation protein A (sspA) from Escherichia coli O157:H7

KEGG orthology group: K03599, RNA polymerase-associated protein (inferred from 98% identity to bmu:Bmul_0347)

Predicted SEED Role

"Stringent starvation protein A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SZ46 at UniProt or InterPro

Protein Sequence (203 amino acids)

>BPHYT_RS17615 Glutathione S-transferase domain (Burkholderia phytofirmans PsJN)
MMVLYSGTTCPFSQRCRLVLFEKGMDFEIRDVDLFNKPEDIAVMNPYGQVPILVERDLIL
YESNIINEYIDERFPHPQLMPADPVQRARARLFLLNFEKELFVHVGTLENEKGKAAEKNH
EKARLAIRDRLTQLAPIFLKNKYMLGEEFSMLDVAIAPLLWRLDHYGIELSKNAAPLMKY
AERIFSRPAYIEALTPSEKVMRR