Protein Info for BPHYT_RS17090 in Burkholderia phytofirmans PsJN

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 199 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 38 to 60 (23 residues), see Phobius details amino acids 71 to 90 (20 residues), see Phobius details amino acids 108 to 129 (22 residues), see Phobius details amino acids 136 to 157 (22 residues), see Phobius details amino acids 175 to 196 (22 residues), see Phobius details PF01914: MarC" amino acids 5 to 194 (190 residues), 165.1 bits, see alignment E=7.6e-53

Best Hits

Swiss-Prot: 46% identical to YHGN_SHIFL: UPF0056 inner membrane protein YhgN (yhgN) from Shigella flexneri

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_3442)

Predicted SEED Role

"Multiple antibiotic resistance (MarC) -related proteins"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SYU7 at UniProt or InterPro

Protein Sequence (199 amino acids)

>BPHYT_RS17090 membrane protein (Burkholderia phytofirmans PsJN)
MEYTFLSATVLLILITDPLGNIPLFVSCLRSVSPKRRTIVILREVAIAFAILLIFMVVGD
RFLRMMSLTDQSLRIGGGIVLFLIALRMVFPHPDGPFGGDTRGGEPLIVPLAIPALAGPS
ALATVMLLTSQAPGKMFEWIGALTVTMVVCAIVLMLAERIQAWLGERAMMAFERLMGLVL
VAISVEMMLGGIRSFVHQL