Protein Info for BPHYT_RS16545 in Burkholderia phytofirmans PsJN

Annotation: endoribonuclease YbeY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 153 PF02130: YbeY" amino acids 41 to 146 (106 residues), 113 bits, see alignment E=4.8e-37 TIGR00043: rRNA maturation RNase YbeY" amino acids 44 to 147 (104 residues), 115 bits, see alignment E=9.2e-38

Best Hits

Swiss-Prot: 100% identical to YBEY_PARPJ: Endoribonuclease YbeY (ybeY) from Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN)

KEGG orthology group: K07042, probable rRNA maturation factor (inferred from 100% identity to bpy:Bphyt_3331)

Predicted SEED Role

"Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SYI7 at UniProt or InterPro

Protein Sequence (153 amino acids)

>BPHYT_RS16545 endoribonuclease YbeY (Burkholderia phytofirmans PsJN)
MSRAPKLTLNLQFPAARSWPEHKALLPRATVAGWIKAALFADGELTVRFVDADEGRTLNR
TYRGKDYSTNVLTFAYAESEDDPVTGDLILCCPVVEKEAAEQGKPLIAHYAHLLVHGTLH
AQGYDHEVEEEAEEMEAIETEILAKLGFPDPYQ