Protein Info for BPHYT_RS16225 in Burkholderia phytofirmans PsJN

Annotation: D-alanyl-D-alanine carboxypeptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 584 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 38 to 57 (20 residues), see Phobius details amino acids 69 to 89 (21 residues), see Phobius details PF02113: Peptidase_S13" amino acids 119 to 550 (432 residues), 292.4 bits, see alignment E=2.8e-91 TIGR00666: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase" amino acids 136 to 534 (399 residues), 213.5 bits, see alignment E=2.1e-67

Best Hits

KEGG orthology group: K07259, D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) [EC: 3.4.16.4 3.4.21.-] (inferred from 100% identity to bpy:Bphyt_3268)

Predicted SEED Role

"D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)" in subsystem Peptidoglycan Biosynthesis (EC 3.4.16.4)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.4.16.4, 3.4.21.-

Use Curated BLAST to search for 3.4.16.4 or 3.4.21.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SYC4 at UniProt or InterPro

Protein Sequence (584 amino acids)

>BPHYT_RS16225 D-alanyl-D-alanine carboxypeptidase (Burkholderia phytofirmans PsJN)
MTHAFLVSLARRITYVRHVALRARSASASASASAATSTFTALSAGAACTASTLATASTMH
LPRRFAPRAMAWLFACAALGFGASLPLAAQARVKATRPSVNVTTVLPQSVMLGLQRAHVP
LSSISVVVEKVGDRTPILALNAGKPMMPASTMKLVTTYSGLSILGPDYRWRTSAYADGTI
DANGVLHGNLYIQGTGDPKLVPEELIDLVQKIHKAGINGIDGALVLDKRYFDPSTRDLPP
FDDDTTAPYNVGPDPLLYAFKSLSFTLTPSPDGSVAIDVLPALAQLQIDNQMHAVNGPCR
GDAASVSPTVTPQPNGTVVASFSGDYSVRCGPRTINVAVLDHSAFFAGGFLALWQQTGGT
FSGATREGAVPVGAKLVATHQGPVLSDIVRDINKFSNNTMARNLFLTIGAAEEKGPATTA
KSARAIQAFLRRDSVDMEYLTLDNGSGLSREEHVTALSLADLLQRANASPVAQVFVESLP
IAGVDGTMRNRLTNQGAGGNAHIKTGTLRDVRAIAGYVASADGNSYVVVSLINDPHSEAA
RAAHDALLEWVYQGPSQGFTKVSEPVVEPRSIKPRKNPHKRGAH