Protein Info for BPHYT_RS15940 in Burkholderia phytofirmans PsJN

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 163 TIGR00011: Cys-tRNA(Pro) deacylase" amino acids 10 to 157 (148 residues), 155.7 bits, see alignment E=3.9e-50 PF04073: tRNA_edit" amino acids 38 to 149 (112 residues), 96.7 bits, see alignment E=5.4e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_3210)

Predicted SEED Role

"Transcriptional regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SY67 at UniProt or InterPro

Protein Sequence (163 amino acids)

>BPHYT_RS15940 membrane protein (Burkholderia phytofirmans PsJN)
MSKSRHVSETPATQFLRRHGVAFGEHPYDYVEHGGTGESARQLGVDEHHVVKTLVMEDEH
AKPLTVLMHGDRTVSTKNLARQIGAKRVEPCKPEVANRHSGYLIGGTSPFGTKKQMPVYV
ESSILEMDKIWLNGGRRGFLVSIDPKVLTQLLAVKAVQCASVD