Protein Info for BPHYT_RS15695 in Burkholderia phytofirmans PsJN

Annotation: luciferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 339 TIGR03558: luciferase family oxidoreductase, group 1" amino acids 4 to 329 (326 residues), 387 bits, see alignment E=3.6e-120 PF00296: Bac_luciferase" amino acids 17 to 300 (284 residues), 125.8 bits, see alignment E=1.3e-40

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_3162)

Predicted SEED Role

"Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T6J0 at UniProt or InterPro

Protein Sequence (339 amino acids)

>BPHYT_RS15695 luciferase (Burkholderia phytofirmans PsJN)
MTRLSVLDQTPVIAGHSVADAIAATVELAQLADDLGYTRYWCAEHHGLRGVSNPCPEVML
ARLGSVTRHIRLGSGGVMLPYYSPFKVAEQFMMLEALFPNRIDLGVGRAPGGDMRTAQAV
AAGAYNRGDIFPQQVADLLGLIHGTLPADHIASGVLLQPQIDTRPQVWMLGSSEFGGLLA
AQLGIPFAFAHFINAHFGHQVAQAYRERFKAGQDIQQAYLAAAVFVICADTEQEAADLEK
AVDLRRVQMAYGLNEPIPTIEQGVAQEYGERERLVIDREKPRSIIGTPETVTERLHALQQ
QFDADELIVLTVAGSYRARLRSYELLAEAFQLERPASTS