Protein Info for BPHYT_RS14655 in Burkholderia phytofirmans PsJN

Annotation: Fis family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 464 PF20161: VpsR" amino acids 3 to 118 (116 residues), 74.9 bits, see alignment E=1.2e-24 PF14532: Sigma54_activ_2" amino acids 143 to 313 (171 residues), 69.7 bits, see alignment E=7.7e-23 PF00158: Sigma54_activat" amino acids 143 to 308 (166 residues), 228.4 bits, see alignment E=1e-71 PF07728: AAA_5" amino acids 165 to 282 (118 residues), 22.5 bits, see alignment E=2.5e-08 PF02954: HTH_8" amino acids 400 to 435 (36 residues), 36 bits, see alignment 1.2e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_2955)

Predicted SEED Role

"Nitrogen regulation protein NR(I)" in subsystem Ammonia assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T5Y5 at UniProt or InterPro

Protein Sequence (464 amino acids)

>BPHYT_RS14655 Fis family transcriptional regulator (Burkholderia phytofirmans PsJN)
MEPATRQLIYVSRDPSAELNTRFHQRGWHVEVVGSARDVRRAVRAGMAAGGLLDLSSEFQ
PHEIAAFESCLTMPNVGWVAATMPGQLQDAALRRLVRDYCFDYVTVPYSGDRIVDSVGHA
YGMISLGETASNDASQGAEGEMVGSCDAMLALFRSIRKVAMTDAPVFISGESGTGKELTA
VAIHERSARRNAPFVPINCGAIPPHLLQSELFGYERGAFTGANQRKIGRVEAANGGTLFL
DEIGDLPLESQASLLRFLQERKVERLGGHGAIDVDVRIISATHVDMTAAMIEGRFRSDLY
HRLCVLQIDEPPLRARGKDIELLARHMLERFKKDASRRLRGFAPDAIAALHNYGWPGNVR
ELINRVRRAIVMSEGRAITARDLELAEYVEIVPVSLAQAREAAERQAIELALLRHRGRLG
DAAQELGISRVTLYRLLCSHGMRHMEGEPLAAPHGELPASVPHL