Protein Info for BPHYT_RS14595 in Burkholderia phytofirmans PsJN

Annotation: RNA-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 72 PF13275: S4_2" amino acids 6 to 69 (64 residues), 84.4 bits, see alignment E=2.1e-28

Best Hits

KEGG orthology group: K14761, ribosome-associated protein (inferred from 94% identity to bph:Bphy_0798)

Predicted SEED Role

"FIG002958: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T5X2 at UniProt or InterPro

Protein Sequence (72 amino acids)

>BPHYT_RS14595 RNA-binding protein (Burkholderia phytofirmans PsJN)
MPNLDFTLTGDYVELHNLLKITGLADSGGSAKMMVADGAVTVDGRVETRKTCKIRAGQVV
LLGDTRIAVHEA