Protein Info for BPHYT_RS13830 in Burkholderia phytofirmans PsJN

Annotation: acetyl-CoA synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 634 transmembrane" amino acids 112 to 135 (24 residues), see Phobius details TIGR02316: propionate--CoA ligase" amino acids 3 to 629 (627 residues), 1095.5 bits, see alignment E=0 PF16177: ACAS_N" amino acids 4 to 58 (55 residues), 89.8 bits, see alignment 1.2e-29 PF00501: AMP-binding" amino acids 61 to 443 (383 residues), 247.4 bits, see alignment E=3.3e-77 PF13193: AMP-binding_C" amino acids 511 to 594 (84 residues), 91.5 bits, see alignment E=7.7e-30

Best Hits

KEGG orthology group: K01908, propionyl-CoA synthetase [EC: 6.2.1.17] (inferred from 100% identity to bpy:Bphyt_2795)

Predicted SEED Role

"Propionate--CoA ligase (EC 6.2.1.17)" in subsystem Methylcitrate cycle or Propionate-CoA to Succinate Module (EC 6.2.1.17)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 6.2.1.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SZK1 at UniProt or InterPro

Protein Sequence (634 amino acids)

>BPHYT_RS13830 acetyl-CoA synthetase (Burkholderia phytofirmans PsJN)
MTSYRDFHRRSIEDPEAFWRDEARRIHWHTPFDTVLDRSNPPFARWFVGGRTNLCHNAVD
RHLAERAQQNALVYVSTETGIERRYTYAELYGEVNRMAAVMRSLDVKRGDVVLLYLPMIP
EALFAMLACARLGAIHSVVFGGFAAPNLAARIDDAKPVLIVTADAGARGGKVIDYTPLMD
EALARAQHKTPRVLLIDRQLAPERLNASYLVAYEPLREQFFDAHVPCEWLESNEPSYVLY
TSGTTGKPKGVQRDVGGYAVALAASMEHIFQGKAGDVMFTASDVGWVVGHSYIVYAPLIA
GLTTVMYEGTPIRPDGGIWWRLVAHHRINLMFTAPTALRVLKKQDPALLKQADLTSLRAL
FLAGEPLDEPTAAWIAGALDKPVIDNYWQTETGWPMLAIPRGVEALPTRLGSPGVPSAGF
NLTLRNELTGEPCPPGEKGVLTLDYPLPPGCMSTVWGDDKRFVSTYWSSIPNQQVYSTFD
WGVQDEDGYVTILGRTDDVINVAGHRLGTREIEEALSSHAAVAEVAVVGVTDPLKGQAAM
AFVVLRDAQAYADTKKRSKLDAELTATVDRQLGAIARPSRVVVVPMLPKTRSGKLLRRAI
AALAEGREPGDLPTIEDPAALQQVREALDDGAGK